JU-works

Workflow Concept

This project is designed around a practical sequence inspection workflow.

Target workflow

1. Import Sanger or FASTA-based sequence data
2. Review chromatogram traces or sequence text
3. Trim, edit, copy, or merge useful sequence regions
4. Align sequences
5. Classify sequences using labels, typing rules, similarity, or simple tree-assisted grouping
6. Inspect known mutation sites
7. Visualize variability across continuous regions
8. Export tables, figures, and grouped FASTA files

Core idea

The goal is not to replace full NGS pipelines or professional phylogenetic software.

Instead, this tool focuses on the practical middle step where users need to inspect, clean, compare, classify, and export sequence data quickly.

Main input types

• Sanger sequencing results
• FASTA datasets
• aligned DNA/RNA/protein sequences

Main output types

• edited sequence datasets
• grouped FASTA files
• mutation tables
• region-level metric tables
• figure exports